There are a number of different web server choices out there but the main two are Linux and Windows web servers. Having just put in some solid 
hours researching the topic I have come to the conclusion that in general it quite probably does not matter which server you use. For the majority of people it will be far more important to choose a really good web host than to worry about the server-type that they implement.
Linux is a free Unix-type operating system originally created by Linus Torvalds with the assistance of developers around the world while the Windows operating system is developed and owned by Microsoft. This means it can often be more expensive to set up and run a Windows server. However, this fact doesn’t really affect you unless you are actually setting up a server for yourself and if you’re reading this article then I’m guessing that it’s safe to assume you’re not. This article is going to offer information for those trying to decide which hosting company to go with. The cost involved in running a server does not affect the cost of a web-hosting package as much as you may think. Despite the general opinion that Windows servers are more expensive to run, buying a Windows hosting package can often turn out to be just as cheap or even cheaper than an equivalent Linux hosting package.
Some people naturally assume that because their PC runs Windows they need to buy a Windows hosting package. This isn’t true. Access to your web account will most likely be through FTP or a control panel and both servers support these methods. The main difference is that some of the FTP commands are slightly different between Linux and Windows and some FTP programs will be designed with one or the other in mind. This means you may occasionally find that when you try and get your FTP program to do something it returns an error message, but it won’t happen very often.
The majority of web features run fine on both platforms including PHP, mySQL, POP3 etc. If you intend to create your site using ASP, FrontPage, the .NET environment, Windows Streaming Media, Access, MSSQL, or any of the other Microsoft proprietary technologies then you probably need to use a Windows host. There is limited support for a number of these technologies in Linux, but they can be expensive and are usually lacking in features. It is probably worth considering the fact that if you use server specific technologies and then change hosts you’ll have a much harder time of it than if you use technologies that can be run on any system. Having it run generic technologies removes the need to focus on specifics and allows you to focus on the quality of service itself.
In terms of performance there’s not a huge difference between the two servers. Linux reportedly performs faster because Windows (as usual) attempts to offer an ‘all in one’ package instead of the extendable Linux implementation. You’ll generally not notice a difference but if performance is of utmost importance to you then maybe this will influence your decision.
Unless you are specifically using features that are unique to one platform or another your time will be much better spent looking for a really good quality host than a really good quality server. Developers are constantly improving both Linux and Windows so they should be fairly close in terms of features, security, and reliability for a long time. It’s the people implementing them that you should be basing your decision on.
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